PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000122321
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 425aa    MW: 47304.9 Da    PI: 9.3115
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000122321genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.82e-055779123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   ++C+ C+k F r  nL+ H r H
  MDP0000122321 57 FVCEVCNKGFQRDQNLQLHRRGH 79
                   89*******************88 PP

2zf-C2H212.20.00055134156123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    +kC++C+k +  +s+ k H +++
  MDP0000122321 134 WKCEKCSKKYAVQSDWKAHSKVC 156
                    58*****************9877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.97E-75679No hitNo description
Gene3DG3DSA:3.30.160.608.7E-65679IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.975779IPR007087Zinc finger, C2H2
PfamPF121717.8E-55779IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0215779IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
SMARTSM003559999129IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.7E-4122154IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.97E-7129154No hitNo description
SMARTSM00355140134154IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MSEDALLVPS TITGFAQEPD SNLNPNPNIN NQFKRKRNPD AEVIAMSPKS LMATNRFVCE  60
VCNKGFQRDQ NLQLHRRGHN LPWKLKQRSK TEVIRKKVYV CPEKTCVHHE PSRALGDLTG  120
IKKHFSRKHG EKKWKCEKCS KKYAVQSDWK AHSKVCGTRE YRCDCGTLFS RKDSFITHRA  180
FCDALAAEQS ARFCSASTIN PSFMNGSITN NAHQPQSIPN FIPMFQSEFA GSDHPAANNS  240
HLSSNAFMPV MLQTASMDMF GPSSSSSQMQ WLINNKKFVE ESSFANANNL SLSSPLIIRG  300
VLKEEEESKG SFSETITTTT TSFYNYNINN NQNHHQQKPM SATALXQKAA RMGSTTSNNP  360
ATTFNDTAFN FNDLVNSMSP SSTQGDTIGD GSLFLSNKHL MMSAGAAAMT KQGQSEQSSL  420
TRDFL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18596KQRSKTEVIRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.131600.0bud| fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008358430.10.0PREDICTED: zinc finger protein JACKDAW-like
RefseqXP_008358437.10.0PREDICTED: zinc finger protein JACKDAW-like
RefseqXP_008358444.10.0PREDICTED: zinc finger protein JACKDAW-like
SwissprotQ944L31e-105IDD9_ARATH; Protein indeterminate-domain 9
TrEMBLD9ZIU40.0D9ZIU4_MALDO; C2H2L domain class transcription factor
STRINGVIT_06s0004g03070.t011e-140(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.17e-94C2H2-like zinc finger protein